Create a minimal targets template in the current project — populate_targets

This function creates a minimal targets template in the current directory. This includes creating a Pipelines.qmd file containing boilerplate for running analyses, and a Results.qmd file which can be used to visualize the results. Parallelization of the pipeline is implemented using targets::tar_make() and crew.cluster, using pre-filled using parameters specific to the LPC system at Penn.

Usage

populate_targets_proj(title, log_folder = "build_logs", overwrite = FALSE)

Arguments

title: (character) base name for project files (eg. "title-Pipeline.qmd" and "title-Results.qmd")
log_folder: (character) directory for LSF logs
overwrite: (logical) overwrite existing template files

Examples

if (FALSE) { # \dontrun{
populate_targets_proj("test")
} # }